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Navigation: Freeware Home - Graphic Apps - CAD - Geneious Basic x64

Geneious Basic x64 5.6.2 freeware     Save this freeware to your freeware selection - Saved Freeware


Author

Biomatters Ltd
OS WinXP, Windows Vista x64, Windows 7 x64
Date Released April 30, 2012
Downloads 412
Filesize 50.20 MB
Keywords molecular biology, biochemistry research, molecular research, bioinformatics, biology, research
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... biology and biochemistry. Geneious is a cross-platform research engine for the retrieval, organization and analysis of biomolecular data that allows any molecular biologist do core bioinformatics tasks in a flash by removing painful data-administration. ...

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3d engine - Geneious Basic x64 freeware - Download Notice

Geneious Basic x64 Free Download - we do not host any Geneious Basic x64 torrent files or links of Geneious Basic x64 on rapidshare.com, depositfiles.com, megaupload.com etc. All Geneious Basic x64 download links are direct Geneious Basic x64 full download from publisher site or their selected mirrors.

3d engine - Geneious Basic x64 freeware - Latest User Reviews

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3d engine - Geneious Basic x64 freeware - The Latest Versions History

Version Date Released Status Release Notes
5.6.2 Apr 30, 2012 New Release Features:
· Restored the old annotation table view

Bugs fixed:
· Fixed "There is already a track on this sequence with name..." error message when running various operations such as cloning and SAM import
· Fixed out of memory error when viewing some sequences
· Fixed a bug where the Csv importer wasn't importing Date fields correctly.
· Fixed an error that would occur when searching a server database using a number field
· Fixed an issue with Sassafras licenses not working
5.6.1 Beta Apr 19, 2012 New Release Features and Improvements:
· Improved fastq import quality format guessing and added dialog asking if the guess is correct if Geneious is unsure of the format
· Better track names when running variant finding
· Batch rename can now rename multiple selected sequence list documents and multiple selected alignments

Bugs fixed:
· Fixed hang using Sequence Logo graph on big alignments/contigs.
· Sequence Viewer: Reduced memory usage when viewing lots (e.g. millions) of annotations
· Fixed occasional failure to copy documents or folders from a server database
· Fixed incorrect assembly results sometimes when mapping to a circular reference sequence
· Fixed a bug where Convert to Oligo was appending a duplicate number to the end of the Oligo's name
· Custom Blast Query-centric alignments no longer double up on annotations
· Fixed a bug that could cause primer documents in a server database to not be available in the primer chooser
5.5.4 Nov 8, 2011 New Release Bugs fixed:
· Sequence Search: Fixed crash sometimes when doing a sequence search
· Sequence Viewer: Fixed crash after deleting sequences in genome lists
· Sequence Viewer: Fixed hang/crash when resizing some trim annotations
· Sequence Viewer: Fixed crash clicking 'go to next annotation' button on some restriction site annotations
· Sequence/Contig Viewer: Fixed crash if you delete a track, create one with the same name, and click save
· Sequence/Contig Viewer: Fixed crash when loading a document that previously had an annotation selected in a track, but that track was turned off while viewing another document
· Alignment/Contig Viewer: Fixed not rendering SNP/coverage annotations on the reference sequence that lie past the ends of the reference sequence
· Alignment/Contig Viewer: Fixed it saying you need to zoom in to view reads on contigs that only have a few reads
· Alignment/Contig Viewer: Fixed occasional crash when dragging bases/gaps around during alignment editing
5.5.2 Sep 28, 2011 New Release Sequence View Improvements:
· New annotation track functionality that groups annotations from a common source so they can be rearranged, colored, shown/hidden, deleted etc Pro-only
· Added an interactive mini-map that shows your current position in the genome and a summary of annotations
· Added a real-time annotation filter in the annotation controls Pro-only
· Added a chromosome selector when viewing an entire genome as a sequence list (saves memory and improves performance)
· Added a slider for changing the zoom level on genomes
· Redesigned "go to position" to have a single input field and a shortcut button in zoom controls on genomes
· Annotations are arranged more efficiently on genomes
· Positions in big sequences are now rendered like 45.2 mb instead of 45,200,000
· Added ability to extract multiple primer annotations simultaneously
· Annotation generators can now run on more than one alignment simultaneously.
5.5.1 Beta Sep 22, 2011 New Release Sequence View Improvements:
· New annotation track functionality that groups annotations from a common source so they can be rearranged, colored, shown/hidden, deleted etc Pro-only
· Added an interactive mini-map that shows your current position in the genome and a summary of annotations
· Added a real-time annotation filter in the annotation controls Pro-only
· Added a chromosome selector when viewing an entire genome as a sequence list (saves memory and improves performance)
· Added a slider for changing the zoom level on genomes
· Redesigned "go to position" to have a single input field and a shortcut button in zoom controls on genomes
· Annotations are arranged more efficiently on genomes
· Positions in big sequences are now rendered like 45.2 mb instead of 45,200,000
· Added ability to extract multiple primer annotations simultaneously
· Annotation generators can now run on more than one alignment simultaneously.
5.4.5 Jul 1, 2011 New Release Bugs fixed:
· Fixed changes being lost when making changes to an alignment built from a sequence list
· Fixed occasional crash exporting in SAM/BAM format
· Fixed crash that can happen downloading full documents from a tblastn run
· Fixed bug that can cause sequences extracted from tree document to be in the wrong order
· Fixed crash that can occur importing ACE files with reads starting or ending with gaps and having trimmed regions
· Removed possibility of crash from removing invalid bases from sequences with quality/traces on import

Pro-only features now enabled in Geneious Basic:
· All import and export
· Visualisation including circular sequences, chromatograms, color schemes, translation, highlighting, dotplot etc
· Teaching tutorials
· Save as PDF and SVG
· NCBI Gene and SNP databases
· Alignment options
5.4.4 Jun 8, 2011 New Release New features:
· Added "Whole Words Only" checkbox to local documents searching so that you can search for partial words
· Added "Find All" button when using "Find in Document" on the sequence/alignment viewer
· Can select multiple folders for moving/deleting and for showing the contents of them all at once

Bugs fixed:
· When a sequence is circularized, annotation intervals extending past the ends of the sequence are now truncated
· When a sequence is de-circularized, annotation intervals spanning the origin are split into multiple intervals
· Fixed poor performance when viewing some sequences with over 100,000 annotations
· Empty sub-folders are now kept when exporting folders
· Separate by barcode works on already paired reads and lets you choose which sequence in the pair has the barcode
· Fixed problem with garbled fonts on some systems
· Fixed de novo assembler running out of file handles on machines with lots of processors
5.4.3 May 12, 2011 New Release Bugs fixed:
· Fixed extra highlighting showing up when highlighting disagreements in the translation of a nucleotide alignment
· Fixed out of memory crash when selecting a big sequence list or contig while the fasta viewer plugin is enabled
· Fixed crash when importing sequences which contain invalid nucleotide or amino acid characters
· Fixed "fromKey>toKey" crash when importing SAM/BAM file
· Fixed crash importing SAM/BAM file when soft clipped region overhangs the start of the reference
· Fixed crash adding enzymes to set
· Improved trimming performance
· Improved SAM/BAM import performance when importing file with multiple references
· Modified Gateway to support use of destination vector with multiple attR pairs
· Fixed queuing misbehaving on a FLEXnet floating license with multiple seats
· Fixed crash extracting from alignment where sequences have been deleted
5.4.2 Apr 29, 2011 New Release Bugs fixed:
· Reduced excessive memory usage by Nexus exporter
· Reduced excessive memory usage by fasta custom BLAST database adder
· Fixed crash when exporting sequence to SAM file with < 2 characters in name
· Improved performance of trimming
· Fixed crash creating Pfam documents using Pfam 24
· Fixed crash when trying to create an aligment of 1 sequence only
· Fixed crash deleting or changing reference sequence in big contigs
· Fixed incorrect amino acid and codon usage statistics after manually editing CDS annotations
· Fixed crash due to too many open files when dealing with large sets of contigs
5.4.1 Beta Apr 21, 2011 New Release New features:
· Added support for NCBI genetic codes 16, 21, 22 and 23
· Enabled Chromatogram view by default and improved user interface
· Made split view on a circular sequence not rotate the view when at minimum zoom when synchronizing the selection with another view

Bugs fixed:
· Fixed bug in Variant/SNP finder where positions with multiple variations from the reference sequence were incorrectly labeled as insertions.
· Fixed bug where searching for a sequence name or annotation or sub-sequence that start on the first base of a sequence were sometimes being incorrectly reported as not found
· Fixed some performance issues with large contigs
· Fixed GC graph frame plot offset by 1 base in some positions
· Fixed crash when trimming some sequences
· Fixed crash when reference assembling trimmed sequences
· Fixed crash creating editable copy of blast results
· Fixed paired reads becoming unpaired when editing a contig or sequence list


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