Biopython for Mac OS X 1.58 freeware    

Author Biopython.org OS Mac OS X Date Released August 18, 2011 Downloads 46 Filesize 7.85 MB Keywords biological, python, biopython, bio, bioinformatic Your Rating   - click to rate - you will be first!

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It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics. The source code is made available under the Biopython License, which is extremely liberal and compatible with almost every license in the world. ...

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Version	Date Released	Status	Release Notes
1.58	Aug 18, 2011	New Release	A new interface and parsers for the PAML (Phylogenetic Analysis by Maximum Likelihood) package of programs, supporting codeml, baseml and yn00 as well as a Python re-implementation of chi2 was added as the Bio.Phylo.PAML module. Bio.SeqIO now includes read and write support for the SeqXML, a simple XML format offering basic annotation support. See Schmitt et al (2011) in Briefings in Bioinformatics, http://dx.doi.org/10.1093/bib/bbr025 Bio.SeqIO now includes read support for ABI files ("Sanger" capillary sequencing trace files, containing called sequence with PHRED qualities). The Bio.AlignIO "fasta-m10" parser was updated to cope with the >>><<< lines as used in Bill Pearson's FASTA version 3.36, without this fix the parser would only return alignments for the first query sequence. The Bio.AlignIO "phylip" parser and writer now treat a dot/period in the sequence as an error, in line with the official PHYLIP specification.