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Navigation: Freeware Home - Education - Science - Staden

Staden 2.0.0b9 freeware     Save this freeware to your freeware selection - Saved Freeware


Author

Rodger Staden
OS Windows2000, Windows2003, WinXP, Windows Vista, Windows 7, Linux, Mac OS X
Date Released December 05, 2011
Downloads 113
Filesize 20.00 MB
Keywords DNA, Gap4, Gap5, Spin, trev, ancillary tools, Staden Package
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A fully developed set of DNA sequence assembly (Gap4 and Gap5), editing and analysis tools (Spin) for Unix, Linux, MacOSX and MS Windows. ...

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Fasta - Staden freeware - Download Notice

Staden Free Download - we do not host any Staden torrent files or links of Staden on rapidshare.com, depositfiles.com, megaupload.com etc. All Staden download links are direct Staden full download from publisher site or their selected mirrors.

Fasta - Staden freeware - Latest User Reviews

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Fasta - Staden freeware - The Latest Versions History

Version Date Released Status Release Notes
2.0.0b9 Dec 5, 2011 New Release
2.0.0b8 Feb 10, 2011 New Release * Various fixes to compilation: parallel makes, improved DESTDIR
support.
* Big tidy up on the cache refence counting system, fixing
multiple sporadic crashes and rarely even data corruptions.
* Fixes to consensus caching sometimes storing corrupted data.
* More robust when we run out of disc space.
* Import GFF should be more robust. This now also supports
"colour=<0-17>" tags to match those used in Artemis.
* The insert size in the Libraries panel is now displayed
correctly (when filled out) instead of at 1/100th of the size.
* Reduced excessive memory usage of tg_index -t on large data
sets. Also fixed a few memory leaks and reference count leaks
(appear like memory leaks).
* SAM export now works correctly when auxillary fields or
read-group data is present.
* Removed a small memory corruption when shutting down
plots. This sometimes caused crashes when quitting the contig
editor.
* Fixed occasional crash when joining contigs.
* Editor searching crash fixes.


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Staden 2.0.0b9 freeware download


... Gap4.) * Tg_index now supports the CAF, fasta and fastq formats. When importing fasta/fastq we just create single-read contigs, so it's simply an easy way of importing consensus sequences or a *few* finishing reads. CAF support will import ...
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