Geneious Basic 5.6.2 freeware    

Author Biomatters Ltd OS WinXP, Windows Vista, Windows 7 Date Released April 30, 2012 Downloads 421 Filesize 50.20 MB Keywords molecular biology, biochemistry research, molecular research, bioinformatics, biology, research Your Rating   - click to rate - you will be first!

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Geneious is a useful, unique and easy-to-use software system which has been designed to greatly speed up and simplify the research in molecular biology and biochemistry. Geneious is a cross-platform research engine for the retrieval, organization and analysis of biomolecular data that allows any molecular biologist do core bioinformatics tasks in a flash by removing painful data-administration. ...

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Free vector - Geneious Basic freeware - The Latest Versions History

Version	Date Released	Status	Release Notes
5.6.2	Apr 30, 2012	New Release	Features: · Restored the old annotation table view Bugs fixed: · Fixed "There is already a track on this sequence with name..." error message when running various operations such as cloning and SAM import · Fixed out of memory error when viewing some sequences · Fixed a bug where the Csv importer wasn't importing Date fields correctly. · Fixed an error that would occur when searching a server database using a number field · Fixed an issue with Sassafras licenses not working
5.6.1 Beta	Apr 19, 2012	New Release	Features and Improvements: · Improved fastq import quality format guessing and added dialog asking if the guess is correct if Geneious is unsure of the format · Better track names when running variant finding · Batch rename can now rename multiple selected sequence list documents and multiple selected alignments Bugs fixed: · Fixed hang using Sequence Logo graph on big alignments/contigs. · Sequence Viewer: Reduced memory usage when viewing lots (e.g. millions) of annotations · Fixed occasional failure to copy documents or folders from a server database · Fixed incorrect assembly results sometimes when mapping to a circular reference sequence · Fixed a bug where Convert to Oligo was appending a duplicate number to the end of the Oligo's name · Custom Blast Query-centric alignments no longer double up on annotations · Fixed a bug that could cause primer documents in a server database to not be available in the primer chooser
5.5.4	Nov 8, 2011	New Release	Bugs fixed: · Sequence Search: Fixed crash sometimes when doing a sequence search · Sequence Viewer: Fixed crash after deleting sequences in genome lists · Sequence Viewer: Fixed hang/crash when resizing some trim annotations · Sequence Viewer: Fixed crash clicking 'go to next annotation' button on some restriction site annotations · Sequence/Contig Viewer: Fixed crash if you delete a track, create one with the same name, and click save · Sequence/Contig Viewer: Fixed crash when loading a document that previously had an annotation selected in a track, but that track was turned off while viewing another document · Alignment/Contig Viewer: Fixed not rendering SNP/coverage annotations on the reference sequence that lie past the ends of the reference sequence · Alignment/Contig Viewer: Fixed it saying you need to zoom in to view reads on contigs that only have a few reads · Alignment/Contig Viewer: Fixed occasional crash when dragging bases/gaps around during alignment editing
5.5.2	Sep 28, 2011	New Release	Sequence View Improvements: · New annotation track functionality that groups annotations from a common source so they can be rearranged, colored, shown/hidden, deleted etc Pro-only · Added an interactive mini-map that shows your current position in the genome and a summary of annotations · Added a real-time annotation filter in the annotation controls Pro-only · Added a chromosome selector when viewing an entire genome as a sequence list (saves memory and improves performance) · Added a slider for changing the zoom level on genomes · Redesigned "go to position" to have a single input field and a shortcut button in zoom controls on genomes · Annotations are arranged more efficiently on genomes · Positions in big sequences are now rendered like 45.2 mb instead of 45,200,000 · Added ability to extract multiple primer annotations simultaneously · Annotation generators can now run on more than one alignment simultaneously.
5.5.1 Beta	Sep 22, 2011	New Release	Sequence View Improvements: · New annotation track functionality that groups annotations from a common source so they can be rearranged, colored, shown/hidden, deleted etc Pro-only · Added an interactive mini-map that shows your current position in the genome and a summary of annotations · Added a real-time annotation filter in the annotation controls Pro-only · Added a chromosome selector when viewing an entire genome as a sequence list (saves memory and improves performance) · Added a slider for changing the zoom level on genomes · Redesigned "go to position" to have a single input field and a shortcut button in zoom controls on genomes · Annotations are arranged more efficiently on genomes · Positions in big sequences are now rendered like 45.2 mb instead of 45,200,000 · Added ability to extract multiple primer annotations simultaneously · Annotation generators can now run on more than one alignment simultaneously.
5.4.5	Jul 1, 2011	New Release	New features: · Added "Whole Words Only" checkbox to local documents searching so that you can search for partial words · Added "Find All" button when using "Find in Document" on the sequence/alignment viewer · Can select multiple folders for moving/deleting and for showing the contents of them all at once Bugs fixed: · Fixed changes being lost when making changes to an alignment built from a sequence list · Fixed occasional crash exporting in SAM/BAM format · Fixed crash that can happen downloading full documents from a tblastn run · Fixed bug that can cause sequences extracted from tree document to be in the wrong order · Fixed crash that can occur importing ACE files with reads starting or ending with gaps and having trimmed regions · Removed possibility of crash from removing invalid bases from sequences with quality/traces on import Pro-only features now enabled in Geneious Basic: · All import and export · Visualisation including circular sequences, chromatograms, color schemes,
5.4.4	Jun 8, 2011	New Release	New features: · Added "Whole Words Only" checkbox to local documents searching so that you can search for partial words · Added "Find All" button when using "Find in Document" on the sequence/alignment viewer · Can select multiple folders for moving/deleting and for showing the contents of them all at once Bugs fixed: · When a sequence is circularized, annotation intervals extending past the ends of the sequence are now truncated · When a sequence is de-circularized, annotation intervals spanning the origin are split into multiple intervals · Fixed poor performance when viewing some sequences with over 100,000 annotations · Empty sub-folders are now kept when exporting folders · Separate by barcode works on already paired reads and lets you choose which sequence in the pair has the barcode · Fixed problem with garbled fonts on some systems · Fixed de novo assembler running out of file handles on machines with lots of processors
5.4.3	May 12, 2011	New Release	Bugs fixed: · Fixed extra highlighting showing up when highlighting disagreements in the translation of a nucleotide alignment · Fixed out of memory crash when selecting a big sequence list or contig while the fasta viewer plugin is enabled · Fixed crash when importing sequences which contain invalid nucleotide or amino acid characters · Fixed "fromKey>toKey" crash when importing SAM/BAM file · Fixed crash importing SAM/BAM file when soft clipped region overhangs the start of the reference · Fixed crash adding enzymes to set · Improved trimming performance · Improved SAM/BAM import performance when importing file with multiple references · Modified Gateway to support use of destination vector with multiple attR pairs · Fixed queuing misbehaving on a FLEXnet floating license with multiple seats · Fixed crash extracting from alignment where sequences have been deleted
5.4.2	Apr 29, 2011	New Release	Bugs fixed: · Reduced excessive memory usage by Nexus exporter · Reduced excessive memory usage by fasta custom BLAST database adder · Fixed crash when exporting sequence to SAM file with < 2 characters in name · Improved performance of trimming · Fixed crash creating Pfam documents using Pfam 24 · Fixed crash when trying to create an aligment of 1 sequence only · Fixed crash deleting or changing reference sequence in big contigs · Fixed incorrect amino acid and codon usage statistics after manually editing CDS annotations · Fixed crash due to too many open files when dealing with large sets of contigs
5.4.1 Beta	Apr 21, 2011	New Release	New features: · Added support for NCBI genetic codes 16, 21, 22 and 23 · Enabled Chromatogram view by default and improved user interface · Made split view on a circular sequence not rotate the view when at minimum zoom when synchronizing the selection with another view Bugs fixed: · Fixed bug in Variant/SNP finder where positions with multiple variations from the reference sequence were incorrectly labeled as insertions. · Fixed bug where searching for a sequence name or annotation or sub-sequence that start on the first base of a sequence were sometimes being incorrectly reported as not found · Fixed some performance issues with large contigs · Fixed GC graph frame plot offset by 1 base in some positions · Fixed crash when trimming some sequences · Fixed crash when reference assembling trimmed sequences · Fixed crash creating editable copy of blast results · Fixed paired reads becoming unpaired when editing a contig or sequence list