VarScan 2.4.6 freeware

The advent of massively parallel sequencing technologies has fundamentally changed the study of genetics. New platforms like the Illumina GAIIx and the Roche GS yield unprecedented levels of sequencing throughput. The analysis and interpretation of data from next-generation sequencing platforms presents a substantial informatics challenge. ...

Author Dan Koboldt
Released 2023-03-28
Filesize 123 kB
Downloads 648
OS Windows XP, Windows Vista, Windows Vista x64, Windows 7, Windows 7 x64, Windows 8, Windows 8 x64, Windows 10, Windows 10 x64, Windows 11, Linux, Mac OS X
Installation Instal And Uninstall
Keywords SNP identifier, identify SNP, filter variant, identify, identifier, SNP
Users' rating
(12 rating)
VarScanCADWindows XP, Windows Vista, Windows Vista x64, Windows 7, Windows 7 x64, Windows 8, Windows 8 x64, Windows 10, Windows 10 x64, Windows 11, Linux, Mac OS X
VarScan - software quality Freeware Download Notice

VarScan Free Download - we do not host any VarScan torrent files or links of VarScan on rapidshare.com, depositfiles.com, megaupload.com etc. All VarScan download links are direct VarScan download from publisher site or their selected mirrors.

VarScan freeware - The Latest User Reviews
VarScan freeware - The Latest Versions History
2.4.6 Mar 28, 2023 New Release
2.3.8 May 13, 2015 New Release VarScan v2.3.8 now incorporates false-positive filtering! This works for single-sample variant calls
or somatic/LOH/germline calls from the somatic command. Both native VarScan output format and VCF
format variant files are supported. SNVs and indels are both supported.
This new command replaces the functionality of the fpfilter.pl accessory script.
2.3.7 Jul 22, 2014 New Release Fixed the issue of zero-depth lines in single-sample pileups for VarScan copynumber
Fixed a similar issue causing inconsistent column output for multi-sample mpileups in VarScan mpileup2*
Multi-sample VCFs generated with VarScan v2.3.6 and earlier might be missing sample columns.

Most popular CAD freeware downloads

SDMetrics

2.5 freeware download

... design size, coupling, and complexity to: establish quality benchmarks to identify potential design problems early on ... focus your review and testing efforts increase system quality and quality assurance effectiveness, find more faults earlier ...

sPlan Viewer

7.0 freeware download

... open, view and print sPlan files in maximum quality. The current version 7.0 of this viewer can ... the Internet, you may offer the free viewer software for downloading. So all visitors of your page ...

Qucs

0.0.19 freeware download

... a circuit simulator with graphical user interface. The software aims to support all kinds of circuit simulation ... GUI is based on Qt® by Digia®. The software aims to support all kinds of circuit simulation ...

3D Home Design by Livecad

3.1 freeware download

... tracing - Global Illumination for a hyper-realistic photo quality rendering - Control the type of lamp and the level of lighting - Easy-to-use drawing-aid tools ...

FreeDiams for Mac OS X

1.0.0 freeware download

... Free Drugs InterActions Manager and preScriptor. FreeDiams software is stable and finalized. It can be used ... models with other users FreeDiams (under development) High quality printing Headers, footers and watermarks fully customizable Printing ...

Gephi

0.10.1 freeware download

... now recognized to facilitate reasoning. This is a software for Exploratory Data Analysis, a paradigm appeared in ... state-of-the-art algorithms layout algorithms, both for efficiency and quality. The Layout palette allows user to change layout ...

MuniWin for Linux

2.0.21 freeware download

The C-Munipack is the software package, which offers the complete solution for reduction ... on Windows system. C-Munipack program is free software; you can redistribute it and/or modify it under ...

CADEMIA for Mac

3.0 RC3 freeware download

Existing software tools for the planning process have severe limitations: ... purposes it is now available as open source software for the practitioner. A long time experience in ...

VarScan

2.4.6 freeware download

... challenge. VarScan is a platform-independent, technology-independent software tool for identifying SNPs and indels in massively ... filters germline variants based on read counts, base quality, and allele frequencyh. Given data for a tumor-normal ...

VEGA ZZ

3.2.3.28 freeware download

... to make your research jobs very easy. This software is FREE for non-profit academic uses. Extreme OpenGL implementation for an incredible real-time rendering quality: lighting (4 customizable light sources + ambient light), ...