Navigation: 

Picard 2.27.2 freeware

freeware screenshot
View Image

Picard comprises Java-based command-line utilities that manipulate SAM files, and a Java API (SAM-JDK) for creating new programs that read and write SAM files. Both SAM text format and SAM binary (BAM) format are supported. ...

Author Sourceforge
Released 2022-05-25
Filesize 16.60 MB
Downloads 935
OS Windows XP, Windows Vista, Windows Vista x64, Windows 7, Windows 7 x64, Windows 8, Windows 8 x64, Windows 10, Windows 10 x64, Windows 11
Installation Instal And Uninstall
Keywords Sequence Alignment Map, bioinformatics tool, BAM manipulation, sequence, bioinformatics, manipulate
Users' rating
(13 rating)
PicardCADWindows XP, Windows Vista, Windows Vista x64, Windows 7, Windows 7 x64, Windows 8, Windows 8 x64, Windows 10, Windows 10 x64, Windows 11
Add to saved freeware Report spyware
Picard - sequence data Freeware Download Notice

Picard Free Download - we do not host any Picard torrent files or links of Picard on rapidshare.com, depositfiles.com, megaupload.com etc. All Picard download links are direct Picard download from publisher site or their selected mirrors.

Picard freeware - The Latest User Reviews
Picard freeware - The Latest Versions History
2.27.2 May 25, 2022 New Release
2.20.7 Sep 16, 2019 New Release Initial Move Calculate the detail metric correctly (on a per-genotype basis). Add more tests Add test to handle multi-sample VCF Refactor detail->summary metrics accumulation. Fix CreateVerifyIDIntensityContaminationMetricsFile to handle LLK and LLK0 as doubles. Added new metric, refined naming of others. Enhanced multiple sample tests.
Updating gradle to 5.6 (#1380)
Updating NIO dependency and fixing a dependency issue (#1391)
Update to htsjdk 2.20.3 (#1381)
Extend travis build matrix to separate Barclay tests from legacy tests. (#952)
PO-18867 Catch NaN Percent_Duplication edge case (#1389)
1.119 Sep 2, 2014 New Release Updated AbstractOpticalDuplicateFinder to handle post-CASAVA 1.8 read names. Pass READ_NAME_REGEX=null to skip optical duplicate detection in MarkDuplicates.
Fixed RevertSam to harmonize different quality score encoding schemes when the sanitize option is set.
Modified Casava18ReadNameEncoder to correctly display filter status.
SamPairUtil: Added the ability to set the mate cigar tag on supplementary alignments. Updated AbstractAlignmentMerger to set mate cigars when merging supplementary alignments.
CollectWgsMetrics: Added 2 new metrics- the fraction of bases attaining 15X and 25X coverage respectively.
Added a new tool, CollectBaseDistributionByCycle, that computes the nucleotide distribution per cycle.
FileAppendStreamLRUCache: Added wrapping of FileOutputStreams with BufferedOutputStreams.
Fixed a bug in BCF2Writer where it was double-closing the output stream.
Fixed VariantContext to ignore symbolic alleles when running strict validation for a VCF.

Most popular CAD freeware downloads

WireCAD

6.0.0.1462 freeware download

... cable in the drawing. WireCAD error-checks the project database and gives you the next number in the sequence. Location changes are made easy by using our ...

USeq

8.9.6 freeware download

... of next generation, ultra high throughput signature sequencing data from the Solexa, SOLiD, and 454 platforms. Initial emphasis: chIP-seq and RNA-Seq with FDR estimations. ...

Geneious Basic

6.0.4 freeware download

... for the retrieval, organization and analysis of biomolecular data that allows any molecular biologist do core bioinformatics tasks in a flash by removing painful data-administration. Geneious comes pre-bundled with bioinformatics functions from ...

Geneious Basic x64

6.0.4 freeware download

... for the retrieval, organization and analysis of biomolecular data that allows any molecular biologist do core bioinformatics tasks in a flash by removing painful data-administration. Geneious comes pre-bundled with bioinformatics functions from ...

Graph Streaming

0.7.0.12 freeware download

... a unified framework for streaming graph objects. Gephi’s data structure and visualization engine has been built with ... might change continuously. By connecting Gephi with external data-sources, we leverage its power to visualize and monitor ...

Graph Streaming for Linux

1.0.3 freeware download

... a unified framework for streaming graph objects. Gephi’s data structure and visualization engine has been built with ... might change continuously. By connecting Gephi with external data-sources, we leverage its power to visualize and monitor ...

Graph Streaming for Mac OS X

1.0.3 freeware download

... a unified framework for streaming graph objects. Gephi’s data structure and visualization engine has been built with ... might change continuously. By connecting Gephi with external data-sources, we leverage its power to visualize and monitor ...

Integrated Genome Browser

7.0.4 B15225 freeware download

... you can use to visualize and explore genome-scale data sets, such as tiling array data, next-generation sequencing results, genome annotations, microarray designs, and the sequence itself. IGB is implemented using the Java programming ...

sRNA Workbench

4.5.1 freeware download

... a complete analysis of single or multiple-sample sRNA datasets from both plants and animals to identify interesting landmarks (such as detection of novel miRNA sequences) in genetic data. A complete list of ...

TARQUIN

4.3.6 freeware download

... the quantities of molecules present in NMR spectroscopic data. The intended purpose of TARQUIN is to aid ... construction optimised for the investigation of particular pathologies sequence parameters. Includes both GUI (see below for screenshot) ...